Dr Rohan MalikPaediatric Gastroenterologist

Information for parents

Gastroscopy and Colonoscopy in Children

If your child has been referred for a gastroscopy or colonoscopy, it is normal to have questions about why it is needed, the anaesthetic, biopsies and what your child will experience.

These procedures let a paediatric gastroenterologist look directly at the lining of the gut and take tiny samples. They are commonly performed in children and help diagnose and guide treatment of many conditions.

Book an AppointmentPrivate consultations in Woolloongabba, Brisbane

What is a gastroscopy?

A gastroscopy (upper endoscopy) uses a thin, flexible tube with a light and camera, passed through the mouth. It examines the oesophagus (food pipe), stomach and duodenum (the first part of the small bowel). It usually takes around 10 to 20 minutes.

What is a colonoscopy?

A colonoscopy examines the colon (large bowel) using a similar flexible tube passed through the bottom. Where appropriate, the end of the small bowel (the terminal ileum) is also examined, which is important in conditions like Crohn’s disease. It usually takes longer than a gastroscopy.

Why might my child need endoscopy?

Does my child have to be awake?

In children, gastroscopy and colonoscopy are generally performed under anaesthesia or deep sedation, managed by an anaesthetic team, so your child is asleep and comfortable. The exact approach depends on your child and the procedural setting, and it will be discussed with you beforehand.

Dr Malik performs paediatric gastroscopy and colonoscopy at St Andrew’s War Memorial Hospital, under specialist paediatric anaesthetic care.

What are biopsies?

Biopsies are tiny samples of the gut lining, about the size of a grain of rice or smaller, taken with small forceps through the scope. They are examined under a microscope and can detect microscopic changes — for example in coeliac disease, eosinophilic oesophagitis or early inflammation — even when the lining looks normal.

Do biopsies hurt?

The gut lining does not have the kind of nerves that feel a biopsy, and your child will be asleep during the procedure. Children do not feel the biopsies being taken, and they do not usually cause pain afterwards.

Colonoscopy preparation

For a colonoscopy, the bowel needs to be completely clear so the lining can be seen properly. This usually involves a special diet and bowel preparation medicine in the day or so beforehand. Poor preparation can mean areas are missed or the procedure needs repeating.

Regimens differ depending on age, weight and medical history, so please follow the specific instructions provided for your child’s procedure, and contact the team if you have trouble.

What happens on the day?

Your child will need to fast for a set time beforehand; you will be told exactly when to stop food and drinks. After arriving, you will meet the nursing staff, anaesthetist and gastroenterologist, who will answer questions and confirm consent. A parent can usually stay with their child until they are asleep.

What happens afterwards?

Your child will wake in the recovery area, where you can join them. Some children feel sleepy, a little bloated or have a mild sore throat. Most children go home the same day once they are awake, drinking and comfortable. You will be given advice about eating, activity and what to watch for.

When do results come back?

What was seen during the procedure may be discussed with you on the day. Biopsy results take longer, as the samples need to be processed and examined, and timing varies. A follow-up is arranged to discuss results and next steps.

When should I be concerned?

After a procedure, contact the hospital or seek medical advice if your child has:

In an emergency, call 000 or go to your nearest emergency department.

When should my child see a paediatric gastroenterologist?

Common reasons for endoscopy include coeliac disease, inflammatory bowel disease and eosinophilic oesophagitis.

Endoscopy is arranged by a paediatric gastroenterologist after assessing your child and deciding the procedure is likely to be helpful. It is not needed for every child with gut symptoms.

Dr Malik is especially recognised for his expertise in paediatric endoscopy.

Straight answers

Questions parents often ask

Is endoscopy safe in children?

Gastroscopy and colonoscopy are commonly performed in children and serious complications are uncommon. As with any procedure and anaesthetic, there are some risks, such as bleeding, perforation or reactions to anaesthesia. The treating gastroenterologist and anaesthetic team will discuss the risks for your child individually.

Will my child feel the scope?

No. Children are asleep under anaesthetic care during the procedure.

Will my child remember it?

Most children do not remember the procedure itself. They may remember going to sleep and waking up in recovery.

Why take biopsies if everything looks normal?

Many conditions, such as coeliac disease and eosinophilic oesophagitis, can only be seen under a microscope. Normal-looking lining does not rule them out.

How long does the procedure take?

A gastroscopy usually takes around 10 to 20 minutes and a colonoscopy longer. Time in hospital, including preparation and recovery, is considerably longer.

Can my child go home the same day?

Most children go home the same day once they have recovered. Occasionally an overnight stay is advised.

How do I prepare an anxious child?

Use simple, honest language suited to their age, explain they will be asleep, bring a comfort toy, and stay calm yourself. Hospital staff are experienced in helping anxious children.

Why does my child need both gastroscopy and colonoscopy?

Some conditions, particularly Crohn’s disease, can affect any part of the gut. Examining both the upper and lower gut in one anaesthetic gives a complete picture.

Related children’s gut-health resources

If your child has persistent gastrointestinal symptoms or your GP has recommended specialist assessment, you can find information about appointments with Dr Rohan Malik here.